When pressing OK after filling in the details in ‘generating multispectral image’ a error message appears saying:
File open error:
“/applikations/ImageJ.app/plugins/micaToolbox/importSettings.txt (No such file or directory) in line 218
dataFile = File . Open ( settingsFilePath<)>;
It sounds like you perhaps haven’t installed everything correctly. Make sure you’ve copied across all directories and subdirectories to your imagej/plugins/ folder. Make sure you can find “importSettings.txt” in the location you’ve shown above (“/applikations/ImageJ.app/plugins/micaToolbox/importSettings.txt”)
Another cause could be that you’ve installed version 2 of the toolbox to the same ImageJ installation as the previous version (v1). Either delete the old version, or make a fresh version of ImageJ.
Yes, you’re right I had not installed it correctly.. The problem was that I copied the whole mica toolbox folder downloaded and should have only copied the subfolders.
Neither of these solved the problem, I still get the same error message. Also, I can’t chose ‘camera type’ when trying to generate a multispectral image.. maybe that has something to do with it?
First, try removing the “.” in the ImageJ path (i.e. rename “ImageJ.app” to “ImageJ” or similar).
Next, try deleting the existing “importSettings.txt” file (it will make a new one).
Then, it’s possible the imageJ installation directory has some kind of read/write access blocked. So try moving the ImageJ folder somewhere else (away from system-protected areas).
Do let me know which of these (if any) solve your issue.